rs30734526 SNP Detail

Summary

• ID
  rs30734526
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72290767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACT CTGCTATCAA CAGTCAGTGG
  R
  TCCCCCGGGC AAAATGCACA GCCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47978546	NES11922804	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A	G		G	G		G	G	G	G		G
ss133283820	ENSMUSSNP1225768	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					A
ss321821425	CHEV_6_72263778	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30734526					SNP	G	G	G	G	G	A	G	A	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978546	NES11922804	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72290767 () rs orientation: forward

Symbol	Name	Function Class
D6Mit243	DNA segment, Chr 6, Massachusetts Institute of Technology 243	1111 bp proximal
Gm67669	predicted gene, 67669	453 bp upstream
Rr632128	regulatory region 632128	289 bp distal
Sftpb	surfactant associated protein B	within coordinates
Tssr1886	transcription start site region 1886	770 bp upstream
Tssr57100	transcription start site region 57100	866 bp downstream
Tssr57101	transcription start site region 57101	173 bp downstream
Tssr57102	transcription start site region 57102	74 bp downstream
Tssr57103	transcription start site region 57103	6 bp upstream
Tssr57104	transcription start site region 57104	199 bp upstream
Tssr57105	transcription start site region 57105	397 bp upstream
Tssr57106	transcription start site region 57106	498 bp upstream
Tssr57107	transcription start site region 57107	598 bp upstream
Tssr57108	transcription start site region 57108	640 bp upstream
Tssr57109	transcription start site region 57109	691 bp upstream
Tssr57110	transcription start site region 57110	727 bp upstream
Tssr57111	transcription start site region 57111	743 bp upstream
Tssr57112	transcription start site region 57112	813 bp upstream
Tssr57113	transcription start site region 57113	949 bp upstream
Tssr57114	transcription start site region 57114	1091 bp upstream
Tssr57115	transcription start site region 57115	1112 bp upstream
Tssr61421	transcription start site region 61421	257 bp downstream
Tssr61422	transcription start site region 61422	831 bp downstream
Tssr61423	transcription start site region 61423	879 bp downstream
Tssr61424	transcription start site region 61424	920 bp downstream
Tssr61425	transcription start site region 61425	984 bp downstream
Tssr61426	transcription start site region 61426	996 bp downstream
Tssr61427	transcription start site region 61427	1222 bp downstream