rs30734528 SNP Detail

Summary

• ID
  rs30734528
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72290814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCCCCAT CAAGTCCATC
  TGGGTGCGCG AAGGGAGGCA ATCCAGGAGT CACCTTTTTC TAGCTCTCAG GGCTCTAGGC
  CTTGCCTGCT GAAGAAGGAA TTGTGAGAGA CTCCCTGAGT TCTGGTCCCA ACTCTGCTAT
  CAACAGTCAG TGGGTCCCCC GGGCAAAATG CACAGCCCCC ACCCTTTGCG ATATCACTAA
  W
  CTAGCTGCAA GTAGCCCAAT GAAGGGAACT TGGCACTTAT GAACTGTCAC CATCACAGTG
  ACAGTGACCC TACTCCCACC AGTAGCTACT CTCCTTGAAA AAGACCTTAC CTCCCACCCT
  AATGCTACTT CCTTTCCCAC AGCAGCCTGC TCCAGAGGAC AAGCCTCAGC CTGCACCCTC
  AGCCCTGTGT CAGTCTGTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978548	NES11922805	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	A	T	A	T	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30734528					SNP	A	A	T	A	A	A	T	A	T	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978548	NES11922805	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72290814 () rs orientation: forward

Symbol	Name	Function Class
D6Mit243	DNA segment, Chr 6, Massachusetts Institute of Technology 243	1064 bp proximal
Gm67669	predicted gene, 67669	500 bp upstream
Rr632128	regulatory region 632128	336 bp distal
Sftpb	surfactant associated protein B	within coordinates
Tssr1886	transcription start site region 1886	723 bp upstream
Tssr57100	transcription start site region 57100	913 bp downstream
Tssr57101	transcription start site region 57101	220 bp downstream
Tssr57102	transcription start site region 57102	121 bp downstream
Tssr57103	transcription start site region 57103	35 bp downstream
Tssr57104	transcription start site region 57104	152 bp upstream
Tssr57105	transcription start site region 57105	350 bp upstream
Tssr57106	transcription start site region 57106	451 bp upstream
Tssr57107	transcription start site region 57107	551 bp upstream
Tssr57108	transcription start site region 57108	593 bp upstream
Tssr57109	transcription start site region 57109	644 bp upstream
Tssr57110	transcription start site region 57110	680 bp upstream
Tssr57111	transcription start site region 57111	696 bp upstream
Tssr57112	transcription start site region 57112	766 bp upstream
Tssr57113	transcription start site region 57113	902 bp upstream
Tssr57114	transcription start site region 57114	1044 bp upstream
Tssr57115	transcription start site region 57115	1065 bp upstream
Tssr61421	transcription start site region 61421	210 bp downstream
Tssr61422	transcription start site region 61422	784 bp downstream
Tssr61423	transcription start site region 61423	832 bp downstream
Tssr61424	transcription start site region 61424	873 bp downstream
Tssr61425	transcription start site region 61425	937 bp downstream
Tssr61426	transcription start site region 61426	949 bp downstream
Tssr61427	transcription start site region 61427	1175 bp downstream