rs30734807 SNP Detail

Summary

• ID
  rs30734807
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72340833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGCCTCT AACAAACAAA
  CAAACAAACA AACAGTATTG TCTTAAGCCC TGTATGTTTG TTATCTTTTT GTCAACTTGA
  CATAAGCTAA GATCATCTGG GAAGAAGGAC CCTCAAACCC TGAGAAAATG CCTCCATTCC
  ATTGGCCTGT AGACTAGTCA TTTTCTTGAT TAATGACTGA TATAGACGGG CCCAGCTCAC
  W
  GTGGGAAGTA ACACCCCAGG GCAGGTCCTG GGGTGTATAG GAAGCAGGAT GAAAGAGCCG
  GTCAGCAGTG TTCTTCCATA GCCTCTGCTG CAGCTCTTGC CTCATGTTCT TGCCATGATT
  TTCCGTCCTG ACTTACCTTC ATGGTGGAGT ATAATTTTAA GATGAAATAA ACCCTCTCCT
  CCACAAGTTG CTTTTGGTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47978948	NES11921273	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30734807					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978948	NES11921273	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72340833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17541	CpG island 17541	1295 bp distal
Rnf181	ring finger protein 181	within coordinates
Rr368103	regulatory region 368103	1132 bp downstream
Tssr61441	transcription start site region 61441	1471 bp upstream
Tssr61442	transcription start site region 61442	1433 bp upstream