rs30734882 SNP Detail

Summary

• ID
  rs30734882
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:154276907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTCCCCT CCCAGTCTCT
  CTTAGCTGAT TTCCACTTTC ACACAGCCAA GCCACAACCG TTGTCTTACA CTCTAGCTGT
  GATGTACTTG GAACAATCTT TGCTCTACTG AGTTGAAAGG GTCCTATTGA CACTTCAGCT
  TTAGAATCTC AGAGAAAACC AGTGTTGCAA AGACCCTCGA AACGGAGATA TCAGAAATTC
  Y
  CTGGAGGGTC TGGAAGGACG CTGAGTTAAC AGTGAGGGCT GCATGCACAG CCAGAGTTTG
  CTCTTTAGCA AGAATGTAAA AAAATCAGGC ATAGTCCTGT TTTGTAACCC CAGCACTAGG
  GAAGTGGAGA CAATGGACTC CCTGGGGTCC CCTGGCCAGA CAGCCTAGAA TAACTGGTGA
  GCTATTGGCC AAGTCAGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47479154	NES10333298	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30734882					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47479154	NES10333298	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154276907 () rs orientation: forward

Symbol	Name	Function Class
Rr587866	regulatory region 587866	783 bp distal
Rr587867	regulatory region 587867	within coordinates
Rr587868	regulatory region 587868	996 bp proximal
Rr587869	regulatory region 587869	1237 bp proximal
Rr587870	regulatory region 587870	1405 bp proximal