rs30735374 SNP Detail

Summary

• ID
  rs30735374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72291241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCACCAC CACCACCACC
  ACCACCACCA CCACCACCAC CACCACCACC ACCACCACCA CAGTGGTTTC TGGCTCCCCC
  CGGTGATGGG GGGCGGCAGG CCCACGTCCT CTGGAAGCCT TCAGAAGGGG CTTCGGGCCT
  TCGCCTCCAC CAGAGCCAAG CCAGCTCCCA TAGCTCCCAC AGCCCACAGG GACTGAGAAG
  R
  ACTGTTGTGG CTCCAAGAAG ACATCGGGTA GAAGCTGGGT ATAGCCACAC CAACCCCTTG
  CTAACATTTC TATGAAATCC AAACTTGAGA AGAATAAAGA ATGGGAACAT GGAGCATTAT
  TCTAAGGGCT GTGGGCGAGG CGCAGTGACA GGGCACTTTC CTAGCAAGCA GGAAACCTGG
  GTTGGATCCC CAGTACTAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978554	NES11922755	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30735374					SNP	A	A	A	A	A	A	G	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978554	NES11922755	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72291241 () rs orientation: forward

Symbol	Name	Function Class
D6Mit243	DNA segment, Chr 6, Massachusetts Institute of Technology 243	637 bp proximal
Gm67669	predicted gene, 67669	927 bp upstream
Rr379593	regulatory region 379593	1651 bp upstream
Rr632128	regulatory region 632128	763 bp distal
Rr632129	regulatory region 632129	1848 bp proximal
Sftpb	surfactant associated protein B	within coordinates
Tssr1886	transcription start site region 1886	296 bp upstream
Tssr57100	transcription start site region 57100	1340 bp downstream
Tssr57101	transcription start site region 57101	647 bp downstream
Tssr57102	transcription start site region 57102	548 bp downstream
Tssr57103	transcription start site region 57103	462 bp downstream
Tssr57104	transcription start site region 57104	259 bp downstream
Tssr57105	transcription start site region 57105	57 bp downstream
Tssr57106	transcription start site region 57106	24 bp upstream
Tssr57107	transcription start site region 57107	124 bp upstream
Tssr57108	transcription start site region 57108	166 bp upstream
Tssr57109	transcription start site region 57109	217 bp upstream
Tssr57110	transcription start site region 57110	253 bp upstream
Tssr57111	transcription start site region 57111	269 bp upstream
Tssr57112	transcription start site region 57112	339 bp upstream
Tssr57113	transcription start site region 57113	475 bp upstream
Tssr57114	transcription start site region 57114	617 bp upstream
Tssr57115	transcription start site region 57115	638 bp upstream
Tssr57116	transcription start site region 57116	1724 bp upstream
Tssr61421	transcription start site region 61421	181 bp upstream
Tssr61422	transcription start site region 61422	357 bp downstream
Tssr61423	transcription start site region 61423	405 bp downstream
Tssr61424	transcription start site region 61424	446 bp downstream
Tssr61425	transcription start site region 61425	510 bp downstream
Tssr61426	transcription start site region 61426	522 bp downstream
Tssr61427	transcription start site region 61427	748 bp downstream