rs30735376 SNP Detail

Summary

• ID
  rs30735376
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72292394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACCTGGG TGAGGCTGAG
  CACCACACAC TCTGGTCATT ATGGTTCCGT ATTGAAGATG TTCTGCTGCT AAGATAAACA
  GTTTCTAGAG CTGAGGGGAT AGACAGCTCA GTGATAGAGT GCTAGTCTAA CATGCTCTGG
  ACCCTGGGTT TTATCCCAGC ACTGAAAACA AGTGAGCACA GAGAGGGGAC AGATTCTCTT
  S
  TCTGCATGTA AGCTTACAAT CCTGAGGCTG AATCCATGCC TGCCATGATG ATCTAAGATC
  ATCTAGGACT GTGCATTCTG AGGACCAGTT CCCATGTTAC ACAATGCCTG AGTCACAGCT
  AATAAAGTCC TGTTCCCTTG TGCAGAGTAA GAACACACTA TCTTTTAAGG GGTGGCAGGA
  GTCACAGTCT CATGCAGCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978556	NES11922647	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30735376					SNP	G	G	G	G	G	G	C	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978556	NES11922647	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72292394 () rs orientation: forward

Symbol	Name	Function Class
D6Mit243	DNA segment, Chr 6, Massachusetts Institute of Technology 243	401 bp distal
Rr379593	regulatory region 379593	498 bp upstream
Rr632128	regulatory region 632128	1916 bp distal
Rr632129	regulatory region 632129	695 bp proximal
Rr632130	regulatory region 632130	1834 bp proximal
Sftpb	surfactant associated protein B	1040 bp downstream
Tssr1886	transcription start site region 1886	853 bp downstream
Tssr57101	transcription start site region 57101	1800 bp downstream
Tssr57102	transcription start site region 57102	1701 bp downstream
Tssr57103	transcription start site region 57103	1615 bp downstream
Tssr57104	transcription start site region 57104	1412 bp downstream
Tssr57105	transcription start site region 57105	1210 bp downstream
Tssr57106	transcription start site region 57106	1099 bp downstream
Tssr57107	transcription start site region 57107	992 bp downstream
Tssr57108	transcription start site region 57108	964 bp downstream
Tssr57109	transcription start site region 57109	915 bp downstream
Tssr57110	transcription start site region 57110	891 bp downstream
Tssr57111	transcription start site region 57111	872 bp downstream
Tssr57112	transcription start site region 57112	803 bp downstream
Tssr57113	transcription start site region 57113	662 bp downstream
Tssr57114	transcription start site region 57114	519 bp downstream
Tssr57115	transcription start site region 57115	494 bp downstream
Tssr57116	transcription start site region 57116	571 bp upstream
Tssr61421	transcription start site region 61421	1334 bp upstream
Tssr61422	transcription start site region 61422	752 bp upstream
Tssr61423	transcription start site region 61423	712 bp upstream
Tssr61424	transcription start site region 61424	690 bp upstream
Tssr61425	transcription start site region 61425	636 bp upstream
Tssr61426	transcription start site region 61426	622 bp upstream
Tssr61427	transcription start site region 61427	390 bp upstream