rs30735378 SNP Detail

Summary

• ID
  rs30735378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72292503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGATAGAG TGCTAGTCTA
  ACATGCTCTG GACCCTGGGT TTTATCCCAG CACTGAAAAC AAGTGAGCAC AGAGAGGGGA
  CAGATTCTCT TGTCTGCATG TAAGCTTACA ATCCTGAGGC TGAATCCATG CCTGCCATGA
  TGATCTAAGA TCATCTAGGA CTGTGCATTC TGAGGACCAG TTCCCATGTT ACACAATGCC
  Y
  GAGTCACAGC TAATAAAGTC CTGTTCCCTT GTGCAGAGTA AGAACACACT ATCTTTTAAG
  GGGTGGCAGG AGTCACAGTC TCATGCAGCC TGATGTCAGC AGGCCTGGGC CACCTCTCTC
  TGCCTTACAG AGCACAAATC CACATCTACT CCCTAATCTC GGCTTCCAGC ATGGTCTCCC
  TCCTGCTGCC TACTCTTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978558	NES11922649	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C	T	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30735378					SNP	T	T	C	T	T	T	C	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978558	NES11922649	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72292503 () rs orientation: forward

Symbol	Name	Function Class
D6Mit243	DNA segment, Chr 6, Massachusetts Institute of Technology 243	510 bp distal
Rr379593	regulatory region 379593	389 bp upstream
Rr632129	regulatory region 632129	586 bp proximal
Rr632130	regulatory region 632130	1725 bp proximal
Sftpb	surfactant associated protein B	1149 bp downstream
Tssr1886	transcription start site region 1886	962 bp downstream
Tssr57101	transcription start site region 57101	1909 bp downstream
Tssr57102	transcription start site region 57102	1810 bp downstream
Tssr57103	transcription start site region 57103	1724 bp downstream
Tssr57104	transcription start site region 57104	1521 bp downstream
Tssr57105	transcription start site region 57105	1319 bp downstream
Tssr57106	transcription start site region 57106	1208 bp downstream
Tssr57107	transcription start site region 57107	1101 bp downstream
Tssr57108	transcription start site region 57108	1073 bp downstream
Tssr57109	transcription start site region 57109	1024 bp downstream
Tssr57110	transcription start site region 57110	1000 bp downstream
Tssr57111	transcription start site region 57111	981 bp downstream
Tssr57112	transcription start site region 57112	912 bp downstream
Tssr57113	transcription start site region 57113	771 bp downstream
Tssr57114	transcription start site region 57114	628 bp downstream
Tssr57115	transcription start site region 57115	603 bp downstream
Tssr57116	transcription start site region 57116	462 bp upstream
Tssr61421	transcription start site region 61421	1443 bp upstream
Tssr61422	transcription start site region 61422	861 bp upstream
Tssr61423	transcription start site region 61423	821 bp upstream
Tssr61424	transcription start site region 61424	799 bp upstream
Tssr61425	transcription start site region 61425	745 bp upstream
Tssr61426	transcription start site region 61426	731 bp upstream
Tssr61427	transcription start site region 61427	499 bp upstream