rs30735380 SNP Detail

Summary

• ID
  rs30735380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72292527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTGGACC CTGGGTTTTA
  TCCCAGCACT GAAAACAAGT GAGCACAGAG AGGGGACAGA TTCTCTTGTC TGCATGTAAG
  CTTACAATCC TGAGGCTGAA TCCATGCCTG CCATGATGAT CTAAGATCAT CTAGGACTGT
  GCATTCTGAG GACCAGTTCC CATGTTACAC AATGCCTGAG TCACAGCTAA TAAAGTCCTG
  Y
  TCCCTTGTGC AGAGTAAGAA CACACTATCT TTTAAGGGGT GGCAGGAGTC ACAGTCTCAT
  GCAGCCTGAT GTCAGCAGGC CTGGGCCACC TCTCTCTGCC TTACAGAGCA CAAATCCACA
  TCTACTCCCT AATCTCGGCT TCCAGCATGG TCTCCCTCCT GCTGCCTACT CTTTCCCTAC
  AAGCTTACTT CTTAAGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978560	NES11922650	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C	T	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30735380					SNP	T	T	C	T	T	T	C	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978560	NES11922650	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72292527 () rs orientation: forward

Symbol	Name	Function Class
D6Mit243	DNA segment, Chr 6, Massachusetts Institute of Technology 243	534 bp distal
Rr379593	regulatory region 379593	365 bp upstream
Rr632129	regulatory region 632129	562 bp proximal
Rr632130	regulatory region 632130	1701 bp proximal
Sftpb	surfactant associated protein B	1173 bp downstream
Tssr1886	transcription start site region 1886	986 bp downstream
Tssr57101	transcription start site region 57101	1933 bp downstream
Tssr57102	transcription start site region 57102	1834 bp downstream
Tssr57103	transcription start site region 57103	1748 bp downstream
Tssr57104	transcription start site region 57104	1545 bp downstream
Tssr57105	transcription start site region 57105	1343 bp downstream
Tssr57106	transcription start site region 57106	1232 bp downstream
Tssr57107	transcription start site region 57107	1125 bp downstream
Tssr57108	transcription start site region 57108	1097 bp downstream
Tssr57109	transcription start site region 57109	1048 bp downstream
Tssr57110	transcription start site region 57110	1024 bp downstream
Tssr57111	transcription start site region 57111	1005 bp downstream
Tssr57112	transcription start site region 57112	936 bp downstream
Tssr57113	transcription start site region 57113	795 bp downstream
Tssr57114	transcription start site region 57114	652 bp downstream
Tssr57115	transcription start site region 57115	627 bp downstream
Tssr57116	transcription start site region 57116	438 bp upstream
Tssr61421	transcription start site region 61421	1467 bp upstream
Tssr61422	transcription start site region 61422	885 bp upstream
Tssr61423	transcription start site region 61423	845 bp upstream
Tssr61424	transcription start site region 61424	823 bp upstream
Tssr61425	transcription start site region 61425	769 bp upstream
Tssr61426	transcription start site region 61426	755 bp upstream
Tssr61427	transcription start site region 61427	523 bp upstream