rs30735382 SNP Detail

Summary

• ID
  rs30735382
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72292554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAAAACA AGTGAGCACA
  GAGAGGGGAC AGATTCTCTT GTCTGCATGT AAGCTTACAA TCCTGAGGCT GAATCCATGC
  CTGCCATGAT GATCTAAGAT CATCTAGGAC TGTGCATTCT GAGGACCAGT TCCCATGTTA
  CACAATGCCT GAGTCACAGC TAATAAAGTC CTGTTCCCTT GTGCAGAGTA AGAACACACT
  R
  TCTTTTAAGG GGTGGCAGGA GTCACAGTCT CATGCAGCCT GATGTCAGCA GGCCTGGGCC
  ACCTCTCTCT GCCTTACAGA GCACAAATCC ACATCTACTC CCTAATCTCG GCTTCCAGCA
  TGGTCTCCCT CCTGCTGCCT ACTCTTTCCC TACAAGCTTA CTTCTTAAGC TCAAGGTACC
  AAAATATAAA ATAAGCAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978562	NES11922651	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	G	A	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30735382					SNP	A	A	G	A	A	A	G	A	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978562	NES11922651	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72292554 () rs orientation: forward

Symbol	Name	Function Class
D6Mit243	DNA segment, Chr 6, Massachusetts Institute of Technology 243	561 bp distal
Rr379593	regulatory region 379593	338 bp upstream
Rr632129	regulatory region 632129	535 bp proximal
Rr632130	regulatory region 632130	1674 bp proximal
Sftpb	surfactant associated protein B	1200 bp downstream
Tssr1886	transcription start site region 1886	1013 bp downstream
Tssr57101	transcription start site region 57101	1960 bp downstream
Tssr57102	transcription start site region 57102	1861 bp downstream
Tssr57103	transcription start site region 57103	1775 bp downstream
Tssr57104	transcription start site region 57104	1572 bp downstream
Tssr57105	transcription start site region 57105	1370 bp downstream
Tssr57106	transcription start site region 57106	1259 bp downstream
Tssr57107	transcription start site region 57107	1152 bp downstream
Tssr57108	transcription start site region 57108	1124 bp downstream
Tssr57109	transcription start site region 57109	1075 bp downstream
Tssr57110	transcription start site region 57110	1051 bp downstream
Tssr57111	transcription start site region 57111	1032 bp downstream
Tssr57112	transcription start site region 57112	963 bp downstream
Tssr57113	transcription start site region 57113	822 bp downstream
Tssr57114	transcription start site region 57114	679 bp downstream
Tssr57115	transcription start site region 57115	654 bp downstream
Tssr57116	transcription start site region 57116	411 bp upstream
Tssr61421	transcription start site region 61421	1494 bp upstream
Tssr61422	transcription start site region 61422	912 bp upstream
Tssr61423	transcription start site region 61423	872 bp upstream
Tssr61424	transcription start site region 61424	850 bp upstream
Tssr61425	transcription start site region 61425	796 bp upstream
Tssr61426	transcription start site region 61426	782 bp upstream
Tssr61427	transcription start site region 61427	550 bp upstream