rs30735722 SNP Detail

Summary

• ID
  rs30735722
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:52818508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGCCCTCCT CACCTGAGTG TCCGGGAGGG AGACAGCGCC
  ATTATCATCT GCACCTACAC AGACAGTGCC ACTGCTTACT TCTCCTGGTA CAAGCAAGAG
  S
  CGGGGGCAGG TCTTCAGTTG CTTATGAGTG TCCTTTCAAA TGTGGACAGA AAAGAAGAAC
  AAGGACTCAC TGTCTTACTG AACAAGAAAG ACAAACGAC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39216249	mCV23549507	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C
ss139509595	ENSMUSSNP6479952	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30735722					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52818508 () rs orientation: forward

Symbol	Name	Function Class
Rr491934	regulatory region 491934	432 bp distal
Rr491935	regulatory region 491935	523 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Trav3-1	T cell receptor alpha variable 3-1	Coding-NonSynonymous
Tssr125465	transcription start site region 125465	461 bp downstream