rs30735795 SNP Detail

Summary

• ID
  rs30735795
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:31217463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACTGTCT GCGGCTAGGG
  GAAAGCTTCG AGAAGCGGCC GCGGGCCTCC TTCCACACGA TTCGCTGTGA GTGAGCGCCC
  CTCCAGGTTC ACTTGGGGCT CCCTGGCCGC CACGTGCAAG CCCAGACTCC CCTGGCTAAT
  CCCGGCTCGA AAGCGTCGCT TTCCTTACCT CTCATCCCTT AGCCTCTGGA ACTTCGATCT
  R
  CTCTTTTACT TTGAAATCTC TTCTCCCAAA CCAAACCTCT GATTGCTGCC AACTATTCTT
  TTACTTTACA GTCTCAAATA CCACTTCAGA AAGTCATAGC CCCTTTATTT CAAATTCCCC
  TTCCCAGCCC TTAAGCCAAA CTTTTCTCCT TTAGTAGCGA TGCCCATTTC TCCTCCCTTG
  TGTCCCCGTT CTCTTTGTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39215653	mCV24421424	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss52709802	NES15559267	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	G	A	G		G	A	G	G
ss139235046	ENSMUSSNP4820187	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30735795					SNP	A	A	G	G	G	A	G	G	G	G	G	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52709802	NES15559267	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:31217463 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6292	CpG island 6292	within coordinates
Eaf1	ELL associated factor 1	within coordinates
Gm63056	predicted gene, 63056	1240 bp upstream
Mettl6	methyltransferase 6, methylcytidine	466 bp upstream
Rr296978	regulatory region 296978	within coordinates
Tssr124943	transcription start site region 124943	1139 bp downstream
Tssr124944	transcription start site region 124944	411 bp downstream
Tssr124945	transcription start site region 124945	325 bp downstream
Tssr124946	transcription start site region 124946	911 bp upstream
Tssr127965	transcription start site region 127965	1241 bp upstream
Tssr127966	transcription start site region 127966	521 bp upstream
Tssr127967	transcription start site region 127967	452 bp upstream