rs30735848 SNP Detail

Summary

• ID
  rs30735848
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:154276440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGAAAGA AAGAAAGAAA
  GAAAGAAAGA AAGAAAGAAA GAAAGAAAGA AAGAAAACGG CCGATGAAAT AAATGTCCCC
  ACTTGAAGAG CTATCCTTCA CCCCCTGAGT GAAAGAATGC CCCTTTTCCC ATTTAGAGGA
  TTGATTTACC CAGAGTGCAA TATAGAAACG TCTGCAGAAG CAGTTAAGCT TAGGACCCAA
  K
  GAGGAGCCCC GCCAGAAAGT AAGCGCTCCA AGTTCACGGA GGGGCGCCTG CCAAATTCCT
  CTGTTAGTTT GTAAGTGAAA ATACAAATGC GATATTTAGC AAAACTGCTC CTTTGTCTTT
  TAAATGGGAC GTGTAAACTA GAGATTATGC GGGCGAGCCA GATCTTACTT GAGCTCCATC
  TAGCAGCTAG TAGCAAGGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47479160	NES10333296	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30735848					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47479160	NES10333296	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154276440 () rs orientation: forward

Symbol	Name	Function Class
Rr587866	regulatory region 587866	316 bp distal
Rr587867	regulatory region 587867	within coordinates
Rr587868	regulatory region 587868	1463 bp proximal
Rr587869	regulatory region 587869	1704 bp proximal
Rr587870	regulatory region 587870	1872 bp proximal