rs30736214 SNP Detail

Summary

• ID
  rs30736214
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72292627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATGCCTG CCATGATGAT
  CTAAGATCAT CTAGGACTGT GCATTCTGAG GACCAGTTCC CATGTTACAC AATGCCTGAG
  TCACAGCTAA TAAAGTCCTG TTCCCTTGTG CAGAGTAAGA ACACACTATC TTTTAAGGGG
  TGGCAGGAGT CACAGTCTCA TGCAGCCTGA TGTCAGCAGG CCTGGGCCAC CTCTCTCTGC
  Y
  TTACAGAGCA CAAATCCACA TCTACTCCCT AATCTCGGCT TCCAGCATGG TCTCCCTCCT
  GCTGCCTACT CTTTCCCTAC AAGCTTACTT CTTAAGCTCA AGGTACCAAA ATATAAAATA
  AGCAAACGAG GGGCTGGAGA GATGGCTCAG CAGCTTGGAG CACTTTTACC TTGCTGAGGA
  CCTGAGTCTG ACTCCAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978564	NES11922653	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T	C	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30736214					SNP	C	C	T	C	C	C	T	C	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978564	NES11922653	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72292627 () rs orientation: forward

Symbol	Name	Function Class
D6Mit243	DNA segment, Chr 6, Massachusetts Institute of Technology 243	634 bp distal
Rr379593	regulatory region 379593	265 bp upstream
Rr632129	regulatory region 632129	462 bp proximal
Rr632130	regulatory region 632130	1601 bp proximal
Sftpb	surfactant associated protein B	1273 bp downstream
Tssr1886	transcription start site region 1886	1086 bp downstream
Tssr57102	transcription start site region 57102	1934 bp downstream
Tssr57103	transcription start site region 57103	1848 bp downstream
Tssr57104	transcription start site region 57104	1645 bp downstream
Tssr57105	transcription start site region 57105	1443 bp downstream
Tssr57106	transcription start site region 57106	1332 bp downstream
Tssr57107	transcription start site region 57107	1225 bp downstream
Tssr57108	transcription start site region 57108	1197 bp downstream
Tssr57109	transcription start site region 57109	1148 bp downstream
Tssr57110	transcription start site region 57110	1124 bp downstream
Tssr57111	transcription start site region 57111	1105 bp downstream
Tssr57112	transcription start site region 57112	1036 bp downstream
Tssr57113	transcription start site region 57113	895 bp downstream
Tssr57114	transcription start site region 57114	752 bp downstream
Tssr57115	transcription start site region 57115	727 bp downstream
Tssr57116	transcription start site region 57116	338 bp upstream
Tssr61421	transcription start site region 61421	1567 bp upstream
Tssr61422	transcription start site region 61422	985 bp upstream
Tssr61423	transcription start site region 61423	945 bp upstream
Tssr61424	transcription start site region 61424	923 bp upstream
Tssr61425	transcription start site region 61425	869 bp upstream
Tssr61426	transcription start site region 61426	855 bp upstream
Tssr61427	transcription start site region 61427	623 bp upstream