rs30736216 SNP Detail

Summary

• ID
  rs30736216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72292641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGATCTAA GATCATCTAG
  GACTGTGCAT TCTGAGGACC AGTTCCCATG TTACACAATG CCTGAGTCAC AGCTAATAAA
  GTCCTGTTCC CTTGTGCAGA GTAAGAACAC ACTATCTTTT AAGGGGTGGC AGGAGTCACA
  GTCTCATGCA GCCTGATGTC AGCAGGCCTG GGCCACCTCT CTCTGCCTTA CAGAGCACAA
  R
  TCCACATCTA CTCCCTAATC TCGGCTTCCA GCATGGTCTC CCTCCTGCTG CCTACTCTTT
  CCCTACAAGC TTACTTCTTA AGCTCAAGGT ACCAAAATAT AAAATAAGCA AACGAGGGGC
  TGGAGAGATG GCTCAGCAGC TTGGAGCACT TTTACCTTGC TGAGGACCTG AGTCTGACTC
  CAAACATCCG CATGGTTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47978566	NES11922655	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30736216					SNP	A	A	G	A	A	A	A	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978566	NES11922655	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72292641 () rs orientation: forward

Symbol	Name	Function Class
D6Mit243	DNA segment, Chr 6, Massachusetts Institute of Technology 243	648 bp distal
Rr379593	regulatory region 379593	251 bp upstream
Rr632129	regulatory region 632129	448 bp proximal
Rr632130	regulatory region 632130	1587 bp proximal
Sftpb	surfactant associated protein B	1287 bp downstream
Tssr1886	transcription start site region 1886	1100 bp downstream
Tssr57102	transcription start site region 57102	1948 bp downstream
Tssr57103	transcription start site region 57103	1862 bp downstream
Tssr57104	transcription start site region 57104	1659 bp downstream
Tssr57105	transcription start site region 57105	1457 bp downstream
Tssr57106	transcription start site region 57106	1346 bp downstream
Tssr57107	transcription start site region 57107	1239 bp downstream
Tssr57108	transcription start site region 57108	1211 bp downstream
Tssr57109	transcription start site region 57109	1162 bp downstream
Tssr57110	transcription start site region 57110	1138 bp downstream
Tssr57111	transcription start site region 57111	1119 bp downstream
Tssr57112	transcription start site region 57112	1050 bp downstream
Tssr57113	transcription start site region 57113	909 bp downstream
Tssr57114	transcription start site region 57114	766 bp downstream
Tssr57115	transcription start site region 57115	741 bp downstream
Tssr57116	transcription start site region 57116	324 bp upstream
Tssr61421	transcription start site region 61421	1581 bp upstream
Tssr61422	transcription start site region 61422	999 bp upstream
Tssr61423	transcription start site region 61423	959 bp upstream
Tssr61424	transcription start site region 61424	937 bp upstream
Tssr61425	transcription start site region 61425	883 bp upstream
Tssr61426	transcription start site region 61426	869 bp upstream
Tssr61427	transcription start site region 61427	637 bp upstream