rs30736221 SNP Detail

Summary

• ID
  rs30736221
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72293173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTGTGCCA CCACTCCCAG
  CACACAAAGG CAAATAAATC CATCTTTAGT ATTAAAGATC TAAATGCTAA ACATGTCCCT
  TTATATGTAT AGCTAAAACA CTTCTATCAT ATTTCTAATT ATAAAAAACT TCATTTGTTA
  TAGAAAATCT AGGAACTACA AACAGACACA GACCCACTCC ACACACTCTC CTCAGTCTGA
  M
  GAGGGCACCG GAACTCCTTG CATGTTCAGA CAGTGAGCTC AGTGCTTTCT CTGCCCCTGC
  AGGCTCTGTC TGGCTCCACC CACAGCACCT AAGCACCAGG GCAAGCTTTC TGCTCAGCCT
  GCTCTGAGAC AGCAGTGGCT GAGATGTAAA TCCCTGGTCT GTAGACTTGA ACTTTACAAT
  AGATATTTTG TAAGTGTACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978572	NES11922598	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A	C	A	C	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30736221					SNP	A	A	C	A	A	A	C	A	C	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978572	NES11922598	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72293173 () rs orientation: forward

Symbol	Name	Function Class
D6Mit243	DNA segment, Chr 6, Massachusetts Institute of Technology 243	1180 bp distal
Rr379593	regulatory region 379593	within coordinates
Rr632129	regulatory region 632129	within coordinates
Rr632130	regulatory region 632130	1055 bp proximal
Sftpb	surfactant associated protein B	1819 bp downstream
Tssr1886	transcription start site region 1886	1632 bp downstream
Tssr57105	transcription start site region 57105	1989 bp downstream
Tssr57106	transcription start site region 57106	1878 bp downstream
Tssr57107	transcription start site region 57107	1771 bp downstream
Tssr57108	transcription start site region 57108	1743 bp downstream
Tssr57109	transcription start site region 57109	1694 bp downstream
Tssr57110	transcription start site region 57110	1670 bp downstream
Tssr57111	transcription start site region 57111	1651 bp downstream
Tssr57112	transcription start site region 57112	1582 bp downstream
Tssr57113	transcription start site region 57113	1441 bp downstream
Tssr57114	transcription start site region 57114	1298 bp downstream
Tssr57115	transcription start site region 57115	1273 bp downstream
Tssr57116	transcription start site region 57116	192 bp downstream
Tssr61422	transcription start site region 61422	1531 bp upstream
Tssr61423	transcription start site region 61423	1491 bp upstream
Tssr61424	transcription start site region 61424	1469 bp upstream
Tssr61425	transcription start site region 61425	1415 bp upstream
Tssr61426	transcription start site region 61426	1401 bp upstream
Tssr61427	transcription start site region 61427	1169 bp upstream