rs30736223 SNP Detail

Summary

• ID
  rs30736223
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72293201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAAATAAA TCCATCTTTA
  GTATTAAAGA TCTAAATGCT AAACATGTCC CTTTATATGT ATAGCTAAAA CACTTCTATC
  ATATTTCTAA TTATAAAAAA CTTCATTTGT TATAGAAAAT CTAGGAACTA CAAACAGACA
  CAGACCCACT CCACACACTC TCCTCAGTCT GAAGAGGGCA CCGGAACTCC TTGCATGTTC
  W
  GACAGTGAGC TCAGTGCTTT CTCTGCCCCT GCAGGCTCTG TCTGGCTCCA CCCACAGCAC
  CTAAGCACCA GGGCAAGCTT TCTGCTCAGC CTGCTCTGAG ACAGCAGTGG CTGAGATGTA
  AATCCCTGGT CTGTAGACTT GAACTTTACA ATAGATATTT TGTAAGTGTA CAGATTATTG
  TCTCAAAAGT CCTTGATTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978574	NES11922599	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	A	T	A	T	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30736223					SNP	A	A	T	A	A	A	T	A	T	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978574	NES11922599	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72293201 () rs orientation: forward

Symbol	Name	Function Class
D6Mit243	DNA segment, Chr 6, Massachusetts Institute of Technology 243	1208 bp distal
Rr379593	regulatory region 379593	within coordinates
Rr632129	regulatory region 632129	within coordinates
Rr632130	regulatory region 632130	1027 bp proximal
Sftpb	surfactant associated protein B	1847 bp downstream
Tssr1886	transcription start site region 1886	1660 bp downstream
Tssr57106	transcription start site region 57106	1906 bp downstream
Tssr57107	transcription start site region 57107	1799 bp downstream
Tssr57108	transcription start site region 57108	1771 bp downstream
Tssr57109	transcription start site region 57109	1722 bp downstream
Tssr57110	transcription start site region 57110	1698 bp downstream
Tssr57111	transcription start site region 57111	1679 bp downstream
Tssr57112	transcription start site region 57112	1610 bp downstream
Tssr57113	transcription start site region 57113	1469 bp downstream
Tssr57114	transcription start site region 57114	1326 bp downstream
Tssr57115	transcription start site region 57115	1301 bp downstream
Tssr57116	transcription start site region 57116	220 bp downstream
Tssr61422	transcription start site region 61422	1559 bp upstream
Tssr61423	transcription start site region 61423	1519 bp upstream
Tssr61424	transcription start site region 61424	1497 bp upstream
Tssr61425	transcription start site region 61425	1443 bp upstream
Tssr61426	transcription start site region 61426	1429 bp upstream
Tssr61427	transcription start site region 61427	1197 bp upstream