rs30736333 SNP Detail

Summary

• ID
  rs30736333
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:120542316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTAGGGG CCGGCCTGGG
  GATAGTGAGA ATCACCTTTG TAACCGTACC GCCGCAGCCG CGGATGCACG AACCGGACCT
  GGGGCGGTCC AGGCCTGGAG TCAAATGAGG GAGGGGGAGG GCTGGCCTTC AAGACTGAGG
  AAAGTAGACT TTATTTGTGT TGTTGCTTCA ACACGTCCTG GATAGACAAC ACTCCACATT
  Y
  CCACCGACAT TCCGCGGCGC CCAGTCCCCT TGGCTTCTGA CTCTGCCCGA CCAGGGCTGG
  GCCCCAGTCC TCTGCCAGCC TGAACTCAGG GGAGTGCTTG CTCTGCGTTT GATTGGGGAA
  GTGCTGTCAA CTCAGCTTGA ACTTCATTCT TGGTGAGCGT TTCAGAAGTC CTTTTTGGGG
  GCTAGGGGGC GGTGAAAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49665931	NES12991884	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30736333					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49665931	NES12991884	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:120542316 () rs orientation: forward

Symbol	Name	Function Class
2610027F03Rik	RIKEN cDNA 2610027F03 gene	within coordinates
Cpgi675	CpG island 675	739 bp distal
Cpgi676	CpG island 676	within coordinates
Gm34352	predicted gene, 34352	within coordinates
Rr417218	regulatory region 417218	171 bp distal
Rr417219	regulatory region 417219	within coordinates
Rr417220	regulatory region 417220	867 bp proximal