rs30736641 SNP Detail

Summary

• ID
  rs30736641
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132799236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAATGTA AAAATACAAA
  GTATCCCTCT TGTATTCACC TGATCTTAAA ATAGGGGAGA GTAGCTAGAG CTAGAAGGGG
  ACTTGGAAAA GGGAAGCTGG ACTTAAAACT GACTTGGAGA AATAAAGAGT CAAGAGGCTG
  CAAGAGGTCC TGTTCAGTAG GAAAATGTAA TTGTTCTTTC TGGAAAGATG GGAAGTGAGT
  Y
  GACCAAACAA GCATGAGAAT GCTAAGTGTG AAGCATGCTA GATAGGACTA ATAACCTGGA
  AGAGAATATG GTATTTCTTT CAGTGGCACT TGTTTGGGTG TAGACGGGAG AAGATGCCAA
  ATAGAAGCAT GTCTACACAG TAGGTAAACC TTAGAGCAGT GGGATAAGGA TGCTTAGAGA
  ACTGGAAGAG AGTCACGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46979576	NES10879149	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30736641					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46979576	NES10879149	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132799236 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13847	CpG island 13847	1153 bp distal
Gstcd	glutathione S-transferase, C-terminal domain containing	1442 bp upstream
Ints12	integrator complex subunit 12	Intron
Rr398029	regulatory region 398029	1417 bp downstream
Rr398030	regulatory region 398030	149 bp downstream
Rr585500	regulatory region 585500	1661 bp distal
Rr585501	regulatory region 585501	1625 bp distal
Rr585502	regulatory region 585502	1453 bp distal
Rr585503	regulatory region 585503	952 bp distal
Rr585504	regulatory region 585504	254 bp distal
Rr585505	regulatory region 585505	886 bp proximal
Tssr31768	transcription start site region 31768	1633 bp downstream
Tssr31769	transcription start site region 31769	1602 bp downstream
Tssr31770	transcription start site region 31770	1568 bp downstream
Tssr31771	transcription start site region 31771	1522 bp downstream
Tssr31772	transcription start site region 31772	864 bp downstream
Tssr35744	transcription start site region 35744	1713 bp upstream
Tssr35745	transcription start site region 35745	1692 bp upstream
Tssr35746	transcription start site region 35746	1628 bp upstream
Tssr35747	transcription start site region 35747	1436 bp upstream
Tssr35748	transcription start site region 35748	1421 bp upstream
Tssr35749	transcription start site region 35749	1081 bp upstream