rs30737976 SNP Detail

Summary

• ID
  rs30737976
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:120541264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATCTGAG GTGGCTGCTT
  TTCTGGGGCC TTCGATCTTA AGTAGGAGGA GGCTTCATTG CCTCCTTCAA TCTTCCTACC
  TTCCCTAGAT AGTAAGGAGT GCAAGACCCA AGGTCTATAT TAGTTTTCAA GGGAATCCAA
  CACTTGCCAT CCTATTTTCT CTTCCCTTTG CGTTTCCACC CACATCTCTC GCACCTGAGC
  Y
  TGGACTAGGC CGAAAAAGCA GGTACTAACC CAGCATTGTA TTCCTTTGGC CATCCTCCAG
  CCAGCCCCGC CGCTGCCTGC GCACCCACAG TCCTCCGAGA GAGCTGCGCA ATTCATTTCC
  GGTCAGCACA GACCAGGTCG CAGGCCTGGG GTCACCTCTC TCCTGTACCT GGGTGAAAAT
  CAAACCGTTC GGGAGTTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49665944	NES12991866	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30737976					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49665944	NES12991866	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:120541264 () rs orientation: forward

Symbol	Name	Function Class
2610027F03Rik	RIKEN cDNA 2610027F03 gene	822 bp upstream
Cpgi675	CpG island 675	71 bp proximal
Cpgi676	CpG island 676	769 bp proximal
Gm34352	predicted gene, 34352	within coordinates
Rr417218	regulatory region 417218	74 bp proximal
Rr417219	regulatory region 417219	882 bp proximal
Rr417220	regulatory region 417220	1919 bp proximal