rs30738136 SNP Detail

Summary

• ID
  rs30738136
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58067151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGTTATTG CATACCCACT ACAATGCAAG GATGAGTAAA
  TAAATGCTCC TGGATAGAGC TAAGCGTCAA ATAGAACCCA GCTGGTGTCT CACTAAAGCA
  R
  TATGGAAAAT GGCTAGCTTC TGCAAAAAAC ATGATTCCAG AGCCATGCAG TGTCTCCCTC
  ACTGTAGCCA TTGGCCTTCT TCCAGGTTTC TCCCAAAGAC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss46979591	NES10791111	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs30738136					SNP	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46979591	NES10791111	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58067151 () rs orientation: forward

Symbol	Name	Function Class
1700007F19Rik	RIKEN cDNA 1700007F19 gene	within coordinates
4921539H07Rik	RIKEN cDNA 4921539H07 gene	within coordinates
Gm40056	predicted gene, 40056	within coordinates
Rr577194	regulatory region 577194	within coordinates
Rr577195	regulatory region 577195	102 bp distal