rs30738821 SNP Detail

Summary

• ID
  rs30738821
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22191419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGCTTGAA AAGACACATG
  ATCCTAAGTT TTCATCTTGA TTAATTATTA CAAAATAAAA ATACCTACAT AGCCCGTGTG
  GAATCAGGGT ATGAAATATT ATTGGTACCC TGAACCACAG GTCTCCTCCT ATGCTTCTCC
  TCGCCATCTT GGTTACTGCA CAGGGTAACT GACTGCTGTC TCAATCTCTA AAGGTGGATG
  W
  TGACTGAACC TCTTTTCAAA CTTTGGAGAA GTGATGCCAA ATATCCTGTT ATTGAAAATA
  CAGTCACTCC ATCCACTCAC CGTTACATAG GTTTGTCTAT AGTTCATACA TTATCATTGG
  CATTTGTGAT TCCATTGATA CAGGAAGCTT TGAGTGAGAA GTAAGTTAAC CAGCGCTGGT
  TATTTTGGTT ATTTCTACTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49165977	NES12517891	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30738821					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49165977	NES12517891	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22191419 () rs orientation: forward

Symbol	Name	Function Class
Lrmda	leucine rich melanocyte differentiation associated	within coordinates
Rr294686	regulatory region 294686	622 bp distal
Tssr124488	transcription start site region 124488	1168 bp downstream
Tssr124489	transcription start site region 124489	1066 bp downstream
Tssr124490	transcription start site region 124490	1007 bp downstream
Tssr124491	transcription start site region 124491	467 bp downstream
Tssr124492	transcription start site region 124492	152 bp upstream
Tssr124493	transcription start site region 124493	1775 bp upstream