rs30738822 SNP Detail

Summary

• ID
  rs30738822
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22191393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACGGACAT TTTTACTGAT
  ATTTAATATG CTTGAAAAGA CACATGATCC TAAGTTTTCA TCTTGATTAA TTATTACAAA
  ATAAAAATAC CTACATAGCC CGTGTGGAAT CAGGGTATGA AATATTATTG GTACCCTGAA
  CCACAGGTCT CCTCCTATGC TTCTCCTCGC CATCTTGGTT ACTGCACAGG GTAACTGACT
  R
  CTGTCTCAAT CTCTAAAGGT GGATGTTGAC TGAACCTCTT TTCAAACTTT GGAGAAGTGA
  TGCCAAATAT CCTGTTATTG AAAATACAGT CACTCCATCC ACTCACCGTT ACATAGGTTT
  GTCTATAGTT CATACATTAT CATTGGCATT TGTGATTCCA TTGATACAGG AAGCTTTGAG
  TGAGAAGTAA GTTAACCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49165978	NES12517890	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30738822					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49165978	NES12517890	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22191393 () rs orientation: forward

Symbol	Name	Function Class
Lrmda	leucine rich melanocyte differentiation associated	within coordinates
Rr294686	regulatory region 294686	596 bp distal
Tssr124488	transcription start site region 124488	1142 bp downstream
Tssr124489	transcription start site region 124489	1040 bp downstream
Tssr124490	transcription start site region 124490	981 bp downstream
Tssr124491	transcription start site region 124491	441 bp downstream
Tssr124492	transcription start site region 124492	178 bp upstream
Tssr124493	transcription start site region 124493	1801 bp upstream