rs30738823 SNP Detail

Summary

• ID
  rs30738823
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22191151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGACTGA TCATAGTAGC
  AGGTGACTAA TGGCTTAACA GCATTCTGAC AGTCCCTGCT GACAGGCGAT AATGAGATTA
  GTGCCGTTTG ATTCCATTAT TAACAAGTAG CCCAAGATCC ATTTGGACAT GTCACGAGCT
  AATGATAGAC GCTAAGGGTC CCTCTAACTT TGGGCCAGCA GTTCAGGTAC TCAATACTCT
  R
  AAGACTAATT GTAAGCTTCT CCCCACCCCA TGAAGAGTTT AAAACGGACA TTTTTACTGA
  TATTTAATAT GCTTGAAAAG ACACATGATC CTAAGTTTTC ATCTTGATTA ATTATTACAA
  AATAAAAATA CCTACATAGC CCGTGTGGAA TCAGGGTATG AAATATTATT GGTACCCTGA
  ACCACAGGTC TCCTCCTATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49165979	NES12517947	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30738823					SNP	G	G	A	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49165979	NES12517947	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22191151 () rs orientation: forward

Symbol	Name	Function Class
Lrmda	leucine rich melanocyte differentiation associated	within coordinates
Rr294686	regulatory region 294686	354 bp distal
Tssr124488	transcription start site region 124488	900 bp downstream
Tssr124489	transcription start site region 124489	798 bp downstream
Tssr124490	transcription start site region 124490	739 bp downstream
Tssr124491	transcription start site region 124491	199 bp downstream
Tssr124492	transcription start site region 124492	420 bp upstream