rs30739091 SNP Detail

Summary

• ID
  rs30739091
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70704259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CCCTCTCTTT GGCATTCCTC CCTGCTGGGC AGGACCCACT GTGGGAACGT
  R
  CTGCAGCCTT ACCTGAAGGA CAACAGCGGT AGCCACGGCT CCCCCACCAG           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39215504	mCV24332320	ABI	CRAMUS_MOUSE	f	SNP		G	A
ss51530287	NES14627571	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	A	A	A	G	A	A	A	G	A
ss139684673	ENSMUSSNP5413860	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30739091					SNP	G	G	A	A	A	A	A	A	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51530287	NES14627571	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70704259 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6694	CpG island 6694	47 bp proximal
Phyhip	phytanoyl-CoA hydroxylase interacting protein	within coordinates
Tssr4470	transcription start site region 4470	198 bp downstream
Tssr126423	transcription start site region 126423	352 bp downstream
Tssr126424	transcription start site region 126424	278 bp downstream
Tssr126425	transcription start site region 126425	222 bp downstream
Tssr126426	transcription start site region 126426	86 bp downstream
Tssr126427	transcription start site region 126427	1 bp upstream
Tssr126428	transcription start site region 126428	34 bp upstream
Tssr126429	transcription start site region 126429	793 bp upstream
Tssr126430	transcription start site region 126430	862 bp upstream
Tssr126431	transcription start site region 126431	1016 bp upstream
Tssr126432	transcription start site region 126432	1050 bp upstream