rs30739745 SNP Detail

Summary

• ID
  rs30739745
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22190661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGTATA TCTGTGATCC
  TGGTTCCCCC TCCCCCCAAC ACACACACCC ACACACACAC ACACACACAC ACACACACAC
  TCACACACAC TCACACTCAC ACACACACAC ACACACTCAC ACACACACAC ACACACACAC
  ACACACACAC ACACTCACAC ACCACTTTCC CTTCCGATAT TATGAGCACC TCCAGGAAGG
  R
  AACTCTCCTT TCTTCAATTT TGTATTGAGC CCAGAATGTA ATGGACATTC CCAAGGATAT
  TTGTGTAGAA GGGTGGGTGA GTGAATAAAT GCATAGATTG TTGAGAGAAT GGGAGGTGTT
  TGAGGTCAGA GAGGTCCGAG GTGGGGCAAC TTATTGAAGC AGAAGCATGT GGTCTTGGCT
  GTGAAAGACT TGGTGTGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49165981	NES12517940	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30739745					SNP	A	A	A	A	A	G	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49165981	NES12517940	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22190661 () rs orientation: forward

Symbol	Name	Function Class
Lrmda	leucine rich melanocyte differentiation associated	within coordinates
Rr294686	regulatory region 294686	within coordinates
Tssr124488	transcription start site region 124488	410 bp downstream
Tssr124489	transcription start site region 124489	308 bp downstream
Tssr124490	transcription start site region 124490	249 bp downstream
Tssr124491	transcription start site region 124491	268 bp upstream
Tssr124492	transcription start site region 124492	910 bp upstream