rs30739747 SNP Detail

Summary

• ID
  rs30739747
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22189960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTAGCATT CATAATTCTA
  ATCCTCTATC CTAGAAAGAC CAAGAGATAC ATGATATATC CCTTGAGGGA TTAAACTACC
  AGACCATTGG CTGGTACGAG ATCTAGTGCT CACATGGATT CCTAGGCTTT GATTTTAGCT
  TCTTTAAAAA TGTACTTGGA AACCTTTCTT TTTCCTTTGA AGGTGTGTTC ATTACGTTTT
  W
  AAGAGAAGAC AGTTTGTTAG CCAAGCTGAG TTGGAAATTA TTTACATCAG TAGAATCTTC
  TGTGCTGCTG GAACTGTGTG AAAGTTGATT CATTGGAGAG TAATGGCAGA AAAAAAGATC
  AGATCAGGAC AGTCTGTGCC CTTGCTCCTC AACTATGGCG TTTGTCTTAG TCAATACCCT
  ATTGCTGGGA AGAGACCATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49165983	NES12517997	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30739747					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49165983	NES12517997	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22189960 () rs orientation: forward

Symbol	Name	Function Class
Lrmda	leucine rich melanocyte differentiation associated	within coordinates
Rr294686	regulatory region 294686	464 bp proximal
Tssr124488	transcription start site region 124488	278 bp upstream
Tssr124489	transcription start site region 124489	365 bp upstream
Tssr124490	transcription start site region 124490	441 bp upstream
Tssr124491	transcription start site region 124491	969 bp upstream
Tssr124492	transcription start site region 124492	1611 bp upstream