rs30739748 SNP Detail

Summary

• ID
  rs30739748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22189863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAAGCAG CTTGCTTCTT
  TCTTGTTTTT CCAGTCTGGT AGATAACTCC TTGTCATCCC CCCAGCTCCC ATTGGAAACC
  CTGAGATGTC CAGGTTAACG TAGCATTCAT AATTCTAATC CTCTATCCTA GAAAGACCAA
  GAGATACATG ATATATCCCT TGAGGGATTA AACTACCAGA CCATTGGCTG GTACGAGATC
  Y
  AGTGCTCACA TGGATTCCTA GGCTTTGATT TTAGCTTCTT TAAAAATGTA CTTGGAAACC
  TTTCTTTTTC CTTTGAAGGT GTGTTCATTA CGTTTTTAAG AGAAGACAGT TTGTTAGCCA
  AGCTGAGTTG GAAATTATTT ACATCAGTAG AATCTTCTGT GCTGCTGGAA CTGTGTGAAA
  GTTGATTCAT TGGAGAGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49165984	NES12517996	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30739748					SNP	T	T	C	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49165984	NES12517996	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22189863 () rs orientation: forward

Symbol	Name	Function Class
Lrmda	leucine rich melanocyte differentiation associated	within coordinates
Rr294686	regulatory region 294686	561 bp proximal
Tssr124488	transcription start site region 124488	375 bp upstream
Tssr124489	transcription start site region 124489	462 bp upstream
Tssr124490	transcription start site region 124490	538 bp upstream
Tssr124491	transcription start site region 124491	1066 bp upstream
Tssr124492	transcription start site region 124492	1708 bp upstream