rs30739825 SNP Detail

Summary

• ID
  rs30739825
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:154278584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTCTCTG TGTCGCCCTG
  ACTGTCCGGG AACTCTCTGT AGACCAGGCT GGCTGGCCTC AAACTCAAAG ATCTGCCTGC
  TTCTGTCTCT CGAGTGCTAG AATTAAAGAT GCTTGCCACC ACTGTCCAGC TAAGAAGTCT
  CATTTCAAAT ATTAGAATTA AGTTTATTTG TAACTATGTG AAATTTTAAG CTAAAGATAA
  R
  CCATTGAGAA AATAATTTTA AAGGAGAGAA TTCTGTTATA ATTTTAATTT AAATTAAAGG
  CATACCACCA CCAGCAGGCA GGAACTTATT GTTAAGATGA GGAAATTCAC TAAGATTTTT
  GATCTCTCCT TGTTGGCTTT CTCTAAAGAC ATACACGGAG TTTGTTTTAG TCCCATCGTG
  CCTTGGAGAG AGGCTGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47479106	NES10333235	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30739825					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47479106	NES10333235	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154278584 () rs orientation: forward

Symbol	Name	Function Class
Rr587867	regulatory region 587867	1432 bp distal
Rr587868	regulatory region 587868	106 bp distal
Rr587869	regulatory region 587869	419 bp distal
Rr587870	regulatory region 587870	251 bp distal