rs30740189 SNP Detail

Summary

• ID
  rs30740189
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72337152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTATATAG TGGGTTCCAA
  GACAGCCAAG GTCACATAGT GAATGAAACC CACTTTCAAA ACTTCCACAA GGACTGTCCC
  CCTTTGAAGA GTCTCTAAAC AGCCTTGCCC TACTTGGGCT GGCTTGACCT TTGATTCCTT
  GATAATGGCG CCTACAGGAG TGGGATACAG AGAGCAACTT TTACAATGTT AAAAGTTTTC
  W
  ATGTGGAAAT AAAGAACACC CCCAGGATTC CACGGTTAAC TAAAGGTTCC AAGGTTAACT
  AGAGATTTCC GGAGTGGGGT GGTGCAAGTT AATTTATCAG TTTTAAACAG CTACAAAGCG
  CCAGGCTCTG ACACAGTTTG ACTTCTAAAA GAACACTCAG ACCCAAGCCC TGGTTGTTCT
  AGGGCCCCAC CACCCAGAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47978910	NES11921252	PERLEGEN	MM_PANEL2	f	SNP	T		T	A	T	T	T	T	T	T	T		A	T	T
ss133283900	ENSMUSSNP5224191	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30740189					SNP	T	T	T	A	T	T	T	T	T	T	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978910	NES11921252	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72337152 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17541	CpG island 17541			1855 bp proximal
Rnf181	ring finger protein 181			mRNA-UTR
				Noncoding-Transcript-Variant
Tmem150a	transmembrane protein 150A			407 bp downstream
Tssr61439	transcription start site region 61439			867 bp downstream
Tssr61440	transcription start site region 61440			1256 bp downstream