rs30740191 SNP Detail

Summary

• ID
  rs30740191
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72337390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTAAAGGT TCCAAGGTTA
  ACTAGAGATT TCCGGAGTGG GGTGGTGCAA GTTAATTTAT CAGTTTTAAA CAGCTACAAA
  GCGCCAGGCT CTGACACAGT TTGACTTCTA AAAGAACACT CAGACCCAAG CCCTGGTTGT
  TCTAGGGCCC CACCACCCAG AGTCTAGAGG CTGGCAGAGG GAATTGCAGC CTGGCACCTT
  Y
  GGACATTTGA CACCTTTGAC ATCTTTCTGG CTAGCAGCAG GGTGGAGGAT TCGGAAGGAG
  CCCCTGCTTC GGCTGGTGAG CCGTGCAGCT GCAGGGTGGG TAAAGAAACC TTTAATGATT
  CAGAGTGCAG AGGGAAGGTA TCAGAGAGGC TGAGCGCTCA GCCCTGGCAG CTGCCTCACG
  TGTACATGGC TCCGTGGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978912	NES11921253	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C	C	C	C	T	C	T	C	C	C
ss133283906	ENSMUSSNP1127207	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30740191					SNP	C	C	C	T	C	C	C	C	C	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978912	NES11921253	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72337390 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17541	CpG island 17541	1617 bp proximal
Rnf181	ring finger protein 181	within coordinates
Rr368103	regulatory region 368103	1917 bp upstream
Tmem150a	transmembrane protein 150A	645 bp downstream
Tssr61439	transcription start site region 61439	629 bp downstream
Tssr61440	transcription start site region 61440	1018 bp downstream
Tssr61441	transcription start site region 61441	1958 bp downstream
Tssr61442	transcription start site region 61442	1976 bp downstream