rs30740647 SNP Detail

Summary

• ID
  rs30740647
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:154278251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTT AATTAAACTT TCCTCTGACA
  Y
  CATGCCATTC TTGCTGCTGT AGGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss47479118	NES10333266	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	C	C		C	C	C
ss136117012	ENSMUSSNP3009122	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs30740647					SNP	T	T	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47479118	NES10333266	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154278251 () rs orientation: forward

Symbol	Name	Function Class
Rr587867	regulatory region 587867	1099 bp distal
Rr587868	regulatory region 587868	within coordinates
Rr587869	regulatory region 587869	86 bp distal
Rr587870	regulatory region 587870	61 bp proximal