rs30743659 SNP Detail

Summary

• ID
  rs30743659
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:21882703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGA GTTTTGGCAA CTGTGTAGGC
  W
  GTAGACACTT ATGTTTAGGA ATTAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss49166900	NES12506445	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	A	T		T	T		T
ss324566732	CHEV_14_22651857	CHEVERUD	SCREENING_POP	f	SNP						A			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30743659					SNP	T	A	T	A	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49166900	NES12506445	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:21882703 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6221	CpG island 6221	491 bp distal
Rr296889	regulatory region 296889	within coordinates
Tssr124454	transcription start site region 124454	1105 bp downstream
Tssr124455	transcription start site region 124455	1061 bp downstream
Tssr124456	transcription start site region 124456	765 bp downstream
Tssr124457	transcription start site region 124457	247 bp upstream
Tssr127690	transcription start site region 127690	1506 bp upstream
Vdac2	voltage-dependent anion channel 2	within coordinates