rs30743661 SNP Detail

Summary

• ID
  rs30743661
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:21882568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAAGGTC ATTACACGTG
  TTCCTAAGGG CGTGGATGTG CACTGGAGAA TGAATGAGCT GCTCCTGGAG CTCGGATTCC
  TTGCCCTTAA GCCTCACGTT GTCGGAGGAC TTGGGGGACC GTAGTAATGT GTTTAAAGTG
  CCATTTGATA TTTAGTTGCT GTAGACATAG ATGGTTGTAT TTTTTGCCCG TGTCTCAATT
  K
  TGCCAGTTCC CAGAGTGTTG GTTTTGATTT TGGAAGTCCT TCCCAAAGGT TTGTTAGGGG
  AGAACGCCTA AGCTTAAATT TTGGTTTTTA TCTCCGTTAA ATCAGTCACC TTGAGTTTTG
  GCAACTGTGT AGGCAGTAGA CACTTATGTT TAGGAATTAG AAAGGCTTCC CCCATTCTTA
  AAACTTGGTA GAAATGTCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49166902	NES12506442	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30743661					SNP	G	G	G	G	T	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49166902	NES12506442	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:21882568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6221	CpG island 6221	356 bp distal
Rr296889	regulatory region 296889	within coordinates
Tssr124454	transcription start site region 124454	970 bp downstream
Tssr124455	transcription start site region 124455	926 bp downstream
Tssr124456	transcription start site region 124456	630 bp downstream
Tssr124457	transcription start site region 124457	382 bp upstream
Tssr127690	transcription start site region 127690	1371 bp upstream
Vdac2	voltage-dependent anion channel 2	within coordinates