rs30743662 SNP Detail

Summary

• ID
  rs30743662
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:21881952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTGCCGA CTCTGGGGCC
  TTAGGGCGGG CCGGCAGCCT GAGTGAACTC AGGGCGGCCC TGGTCCCCTA AGATGGCCGC
  AGCGGCCCCG GCCCCTTTCT CTAATGTCCG AGCTCCCCAG GGGACCCTTT GACTGTCCCC
  TGACCGCACT TCTTGTCCCT TTCACAGATC ACCTTTTCCC CGCGACTTCG CCATGGCTGA
  R
  TGCTGTGTAC CGGTATGCCC ACGGCGTAAG TAGCACAAGA GGTGTTTGCG CGATGGGGCC
  ATGGGGGCTG TGCTGTTCCT CTTTAGAGAA CCATACCTTG TTCCGCCGTG GCCCACATGA
  TGCCTGCAAA GACTTGGAAA GTTTGCTTCT TTGCGCGCCC CCTAAGTCTT ACACTGCCAC
  TCTGTTGACG GACGTGGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49166904	NES12506439	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30743662					SNP	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49166904	NES12506439	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:21881952 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6221	CpG island 6221	within coordinates
Rr296889	regulatory region 296889	within coordinates
Tssr124454	transcription start site region 124454	354 bp downstream
Tssr124455	transcription start site region 124455	310 bp downstream
Tssr124456	transcription start site region 124456	14 bp downstream
Tssr124457	transcription start site region 124457	998 bp upstream
Tssr127690	transcription start site region 127690	755 bp upstream
Vdac2	voltage-dependent anion channel 2	within coordinates