rs30743663 SNP Detail

Summary

• ID
  rs30743663
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:21880808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAAGACA GGGTTTTTCT
  GTATTGCCCT TGCTGTCCTG GAACTCTCTC TGTAGACCAG GCTGGCCTCG AATTCAGAAA
  TCCACCTGCC TCTGCCTCCC AAGTGCTGGG ATTAAAGGTG TGCACCACCA CTATCCAGCG
  GTCTCTTATC TTTATTAACC TTTTGCCTCA CTCTGTAGTT TAGCCTCAAT CTGGTGTAAT
  Y
  TCTCTGCCGC CCAGATCTGG GACTACAGGT ATAGGCATCA GGACTGGCTG CTCCCTCCCT
  CTTCTGGCAT ATCTAAAGAA CTTGAGAGCA GCATTCTAAT GACTGGTCAG CATGAATCCT
  ACAGTTATTC CCTTGTCTCT CCAGGCCTCT CAACCAGGGG AAGCTTCTCT TCCTAGAGCA
  GGATGTGCTT CTGCGCGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49166906	NES12506437	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30743663					SNP	T	T	T	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49166906	NES12506437	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:21880808 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6221	CpG island 6221	181 bp proximal
Rr296889	regulatory region 296889	within coordinates
Tssr124454	transcription start site region 124454	779 bp upstream
Tssr124455	transcription start site region 124455	791 bp upstream
Tssr124456	transcription start site region 124456	1102 bp upstream
Tssr127690	transcription start site region 127690	383 bp downstream
Vdac2	voltage-dependent anion channel 2	821 bp upstream