rs30744543 SNP Detail

Summary

• ID
  rs30744543
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55151623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTACTCTG CTACTCCACA GTCCTCTCAC TCAGGGTGGA
  CTGACTGGTG TGCAGAGGCC ACTCTGCTTC TCTCCATGTT ACTTGTGATG CAGATGGATC
  S
  ATCTTTTTTT TTTATAATGC AGATGTTTCA TTTTTTTAAA AATGTATTAC TGTGCAAGTA
  CATGATGCGT GTGTGTAGGT ATGCAGGCCA TGCTGTGTT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39217440	mCV25267200	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C	G
ss139573052	ENSMUSSNP210896	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30744543					SNP	G	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55151623 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6478	CpG island 6478	860 bp distal
Slc22a17	solute carrier family 22 (organic cation transporter), member 17	1034 bp upstream
Tssr128658	transcription start site region 128658	1835 bp upstream
Tssr128659	transcription start site region 128659	1708 bp upstream
Tssr128660	transcription start site region 128660	1124 bp upstream
Tssr128661	transcription start site region 128661	1082 bp upstream
Tssr128662	transcription start site region 128662	1038 bp upstream