rs30744667 SNP Detail

Summary

• ID
  rs30744667
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:9619033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGCCGGGA GCTAGGGGGA GGCGAGGGAC
  TGGAGAGAAA GTTGTCGTTC CAGGGCCCAG CACAGGGTCT GGGGCTGCCT TCCAGGAGGC
  AGTAAAGACT GAGAAGTGAG TGGAACACAG TTGACACATA TCAGGTAGTA TACACTGCAC
  R
  TGAACTGTTG GTAGCAGTAA GTGTAGACCA AGGGGAGGAC CAGAGTGAGC AAAGTGATTC
  AGACATGAGT CACTTATAGG ACAGGAAGGA TAGTGAGGAA ATCAACCCAG GTGGACATCC
  TCAGAAGGCA AGGGTGGCCC AGGCAGGAAC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44958464	mCV24092621	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss148565833	ENSMUSSNP3711831	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
ss319630707	CHEV_1_9538889	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30744667					SNP	A	A	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:9619033 () rs orientation: forward

Symbol	Name	Function Class
Adhfe1	alcohol dehydrogenase, iron containing, 1	Intron
Rr407602	regulatory region 407602	850 bp distal
Rr407603	regulatory region 407603	within coordinates
Rr407604	regulatory region 407604	358 bp proximal
Rr407605	regulatory region 407605	1708 bp proximal
Rrs1	ribosome biogenesis regulator 1	1353 bp downstream
Tssr5898	transcription start site region 5898	707 bp downstream
Tssr5899	transcription start site region 5899	683 bp downstream