rs30744764 SNP Detail

Summary

• ID
  rs30744764
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:21880555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCACCTTT TACAGAATTT
  AGAGAACACG GTTTGCAGGC CAGGTTGACA GAGCCCCCGT GACCCTCTTG TTTCTATTTC
  TGGAACTACT ACTGGCTTTT AATGTGGGTG TTGGGTGCTG GGGATCCGAG CTCAGGTCCC
  CTTGCATGCA CAGCAAGATA AGGGTTCTTA CTCACTGAGC CTCCGATTCT ATCTTTATTA
  W
  CCTGTTTGCC TCACCCTGTA GTTTAGCCTC AAACTGGTCT CTATTATTAT TATTTCAAGA
  CAGGGTTTTT CTGTATTGCC CTTGCTGTCC TGGAACTCTC TCTGTAGACC AGGCTGGCCT
  CGAATTCAGA AATCCACCTG CCTCTGCCTC CCAAGTGCTG GGATTAAAGG TGTGCACCAC
  CACTATCCAG CGGTCTCTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49166907	NES12506499	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30744764					SNP	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49166907	NES12506499	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:21880555 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6221	CpG island 6221	434 bp proximal
Rr296889	regulatory region 296889	within coordinates
Tssr124454	transcription start site region 124454	1032 bp upstream
Tssr124455	transcription start site region 124455	1044 bp upstream
Tssr124456	transcription start site region 124456	1355 bp upstream
Tssr127690	transcription start site region 127690	636 bp downstream
Vdac2	voltage-dependent anion channel 2	1074 bp upstream