rs30745390 SNP Detail

Summary

• ID
  rs30745390
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:165950380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAT AAAAATGAAT ATTTTGAAGC
  M
  GGGTGTGGTG GCACACGCCT TTAAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss44959785	mCV23028207	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
ss146013051	ENSMUSSNP6972724	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30745390					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165950380 () rs orientation: forward

Symbol	Name	Function Class
Rr372394	regulatory region 372394	1291 bp upstream
Rr422532	regulatory region 422532	416 bp proximal
Styxl2	serine/threonine/tyrosine interacting like 2	Intron
Tssr14808	transcription start site region 14808	1666 bp upstream