rs30745563 SNP Detail

Summary

• ID
  rs30745563
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134421304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTG TACCCTGTGT CTAAAATCTT
  K
  CATTCCTGAC AACCAAATGG TTAAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44959421	mCV25088197	ABI	CRAMUS_MOUSE	f	SNP		G		T		G
ss49678267	NES12994019	PERLEGEN	MM_PANEL2	f	SNP	G	G	T		G	G	G		T	G	T	G		G
ss145506415	ENSMUSSNP1035419	ENSEMBL	ENSEMBL_Sanger	f	SNP		G				G
ss319982678	CHEV_1_136390143	CHEVERUD	SCREENING_POP	f	SNP								G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30745563					SNP	G	G	T	T	G	G	G	G	T	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678267	NES12994019	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134421304 () rs orientation: forward

Symbol	Name	Function Class
Cpgi770	CpG island 770	930 bp proximal
Rabif	RAB interacting factor	1073 bp upstream
Rr396314	regulatory region 396314	898 bp upstream
Rr418926	regulatory region 418926	1827 bp distal
Rr418927	regulatory region 418927	164 bp proximal
Rr418928	regulatory region 418928	592 bp proximal
Rr418929	regulatory region 418929	1164 bp proximal
Rr418930	regulatory region 418930	1605 bp proximal
Tssr8899	transcription start site region 8899	1062 bp upstream
Tssr8900	transcription start site region 8900	1170 bp upstream
Tssr8901	transcription start site region 8901	1420 bp upstream