rs30745868 SNP Detail

Summary

• ID
  rs30745868
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138195228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCATGCTGC CTGGCTGCCG GAGGAGGGAG GAACCGCCAC
  AGGGCGGGGA GAGGGACCCA GCCGGGGAGG AGCTCCGATG GCAGGCCTAG GCGCCGGACC
  S
  GGAGGACCAG GGCCCGCCCC TACGCAGCGC GCCCCCGCCC CCCTCCGCGC ACGCGCGGCC
  AGGGCCCCGC CCCTTAGCGC GCGCTCACCT GCTGCCCCG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45460521	mCV23934672	ABI	CRAMUS_MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs30745868					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138195228 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13875	CpG island 13875	within coordinates
Metap1	methionyl aminopeptidase 1	mRNA-UTR
Rr586147	regulatory region 586147	within coordinates
Tssr31986	transcription start site region 31986	586 bp downstream
Tssr31987	transcription start site region 31987	565 bp downstream
Tssr31988	transcription start site region 31988	306 bp upstream
Tssr35894	transcription start site region 35894	423 bp upstream
Tssr35895	transcription start site region 35895	56 bp upstream