rs30746246 SNP Detail

Summary

• ID
  rs30746246
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:120302164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACAGTTC AGATCTAGGT
  GTGGCCCCGC CGACCATCGA CGTCATTGTC TGGACTCAGT CTCTTCCGGG AAGGTGCCTC
  ACAGAATCTT TTTTCCAGAA TAAGAGTCCC CTCTGGATGT TATCTCTCTC TTCTTCCAGC
  ATGAGGTTCC TCGGCAAACT CTTATTTCTT TGTGTCCATG ATCCTAACAA TCTGATAGAT
  S
  GAGAGACACA AGTGTTTCTT TCAAATGTCT TCATTTCTGT CCCGGACAAT TTATAAGCAC
  ACATGTCCTG GGTGAGTGAC CTCCTCCATA GCTGGAGAGC TCCCTCAGGC TCCAGAGCCA
  TCTCCCTACT CCCTGGCATA ATAAAATGTG GCATGCTTGT TAGTGAACTT GTTCATAGTT
  CACTGAGACT GCCATCTCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49666862	NES12997058	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30746246					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49666862	NES12997058	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:120302164 () rs orientation: forward

Symbol	Name	Function Class
Rr371940	regulatory region 371940	within coordinates