rs30746253 SNP Detail

Summary

• ID
  rs30746253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:120301865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTCTTGA TGTGTCTTAC
  TAATTTGGAT TACACACTAA AGGCTCCAAT CCCAGTCAGG TAGGTGTCTG TCCTGACCTG
  CTTCCTCTTT CTCTGCTAAC CCATCACTGC CCAAGACTGT CCACCTGGGA GTTCCAAATG
  TCTTAGTTCA TAGCATGTTA TTGAATTTGG GACCCCACTC TGTACCCCAA AAGTCAAATC
  Y
  AACCACTGTC CCTGAGAAGT CAATTAAAGA AGCCAGATTT ATAGACAGGA GCTGAATAGA
  GATTAAAATT TAAATAGAGA GTGAGGGGTA TGCACATCTA AACAGTTCAG ATCTAGGTGT
  GGCCCCGCCG ACCATCGACG TCATTGTCTG GACTCAGTCT CTTCCGGGAA GGTGCCTCAC
  AGAATCTTTT TTCCAGAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49666869	NES12997051	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30746253					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49666869	NES12997051	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:120301865 () rs orientation: forward

Symbol	Name	Function Class
Rr371940	regulatory region 371940	within coordinates