rs30746785 SNP Detail

Summary

• ID
  rs30746785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79749783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTC AACATTCCGT GGAAAAGTCT
  Y
  AAGTCCAAGG ATTCTAAGGT TTACG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45460029	mCV23533178	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		T
ss47034630	NES10770956	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C	T	T	T		C	T	T	C		C
ss135376559	ENSMUSSNP1244422	ENSEMBL	ENSEMBL_Sanger	f	SNP			T							T
ss320812302	CHEV_3_79646398	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30746785					SNP	C	C	T	T	T	T	T	C	C	T	T	T	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47034630	NES10770956	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79749783 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13278	CpG island 13278			149 bp proximal
Gm64378	predicted gene, 64378			289 bp upstream
Rr397727	regulatory region 397727			within coordinates
Rr578586	regulatory region 578586			758 bp distal
Rr578587	regulatory region 578587			257 bp distal
Rr578588	regulatory region 578588			193 bp proximal
Rr578589	regulatory region 578589			300 bp proximal
Rr578590	regulatory region 578590			1591 bp proximal
Tmem144	transmembrane protein 144			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr29591	transcription start site region 29591			283 bp upstream
Tssr33748	transcription start site region 33748			166 bp downstream
Tssr33749	transcription start site region 33749			381 bp downstream
Tssr33750	transcription start site region 33750			960 bp downstream