rs30747472 SNP Detail

Summary

• ID
  rs30747472
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:5120952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCCCTTT CAGAAAAGAT
  ATGCTTCGTA ATTTTCAGTG AAATGAGACA GGAGAGGGCA GGGCCTTACT TACCCTCTGT
  TACACAGCAG GCTGAGTGGC CTGGAGGTTT GATAAGGGAG AAAGTCCATA CTTGTCCCCC
  ACTTTATTAA AATGCAACAA AAATCTGGGG GAAGGTCTTG AGGTGAGGGT CTCTGATGAA
  S
  TGGAGTCCAG CTGGAGTTTG GGAATCTCAG GTAGGATGGG GCTGGAGATT AGGGGAGAGA
  GGAGTCTCCA GCGGTCTGCT CTTCTGAACT TTCTTCTGAA CGTTCTTTCT CATGGTCATA
  GGTTGCCCAG AGGTCTAGGC AGGGAATCGC CAAGGATGCA GCCACCCTAG GGTTGTAGGT
  CTATCGCCTT CATAGAAGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44959240	mCV24717123	ABI	CRAMUS_MOUSE	f	SNP	C	G					C		C
ss50580618	NES13651952	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G	C	G		C	C	C	G		C	G	C	C		C
ss146009898	ENSMUSSNP7005890	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							C
ss325716476	CHEV_19_5070924	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30747472					SNP	C	G	G	G	C	G	C	C	C	C	G	G	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50580618	NES13651952	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5120952 () rs orientation: forward

Symbol	Name	Function Class
Cd248	CD248 antigen, endosialin	284 bp downstream
Cpgi10428	CpG island 10428	1863 bp distal
Cpgi10429	CpG island 10429	603 bp proximal
Cpgi10430	CpG island 10430	994 bp proximal
Gm46658	predicted gene, 46658	1302 bp upstream
Rr405800	regulatory region 405800	1073 bp upstream
Rr542921	regulatory region 542921	812 bp proximal
Rr542922	regulatory region 542922	1316 bp proximal
Tmem151a	transmembrane protein 151A	Noncoding-Transcript-Variant
Tssr154384	transcription start site region 154384	1638 bp downstream
Tssr154385	transcription start site region 154385	1478 bp downstream
Tssr154386	transcription start site region 154386	1219 bp downstream
Tssr154387	transcription start site region 154387	1171 bp downstream
Tssr154388	transcription start site region 154388	1089 bp downstream
Tssr157540	transcription start site region 157540	1150 bp downstream
Tssr157541	transcription start site region 157541	1185 bp downstream
Tssr157542	transcription start site region 157542	1573 bp downstream