GGGAAGAGAA CTGTAAAGGC CCTTTTACAT TATCTGGTCA CACAGAGGTC AAGATGGAAA GGACTATTAA ATTCAGAAAA CAGCAAGCCC TCTTTTGTTA S AGAAATGACT AGAAAATGTG GGTAAAGTAG CAAAGAATTA AATAAAAAGT CAAATTTAGG ATATCTTAAA GCAACCAACA TCTTTAATTA GAAAGCAAC S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss44959899 | mCV23373754 | ABI | CRAMUS_MOUSE | f | SNP | G | G | G | C | |||||||||||||
ss51401414 | NES14455642 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | G | C | G | G | C | G | G | C | G | ||
ss145999136 | ENSMUSSNP3243385 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | G | C | ||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs30747953 | SNP | G | G | G | G | G | G | G | G | G | C | G | G | C | G | G | C | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51401414 | NES14455642 | PERLEGEN | MM_PANEL | f | SNP | C/G |
Location: Chr1:165157014 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Dcaf6 | DDB1 and CUL4 associated factor 6 | 55 bp downstream | ||||||
Rr20301 | regulatory region 20301 | 413 bp distal | ||||||
Rr25485 | regulatory region 25485 | 1690 bp distal | ||||||
Rr25486 | regulatory region 25486 | 117 bp proximal | ||||||
Rr25487 | regulatory region 25487 | 1144 bp proximal | ||||||
Tssr14767 | transcription start site region 14767 | 367 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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