rs30748838 SNP Detail

Summary

• ID
  rs30748838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34525077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCG ACCGACCGTT GATTTCATCA
  Y
  CGGGTGGCTG TTGCTGTCTC AGCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss44959045	mCV23084331	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss148889165	ENSMUSSNP6746330	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss319682284	CHEV_1_34542841	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30748838					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34525077 () rs orientation: forward

Symbol	Name	Function Class
4930568A12Rik	RIKEN cDNA 4930568A12 gene	within coordinates
Cpgi120	CpG island 120	within coordinates
Gm32566	predicted gene, 32566	15 bp downstream
Rr409037	regulatory region 409037	1547 bp distal
Rr409038	regulatory region 409038	1097 bp distal
Rr409039	regulatory region 409039	74 bp distal
Rr409040	regulatory region 409040	within coordinates
Rr409041	regulatory region 409041	206 bp proximal
Rr409042	regulatory region 409042	1601 bp proximal
Tssr36	transcription start site region 36	667 bp downstream
Tssr11221	transcription start site region 11221	50 bp upstream
Tssr11222	transcription start site region 11222	29 bp upstream