rs30748961 SNP Detail

Summary

• ID
  rs30748961
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135934621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGAAGGCCC AGGTCAGGGA AGCCGATTTG CAACAGCCTC
  AAAGAACTAT CAAGGCTGCC TCTAGGCTGC CTGGACTTGG GCAAATTACC TCCCCATCTC
  K
  GGGCCTCAGT TTCCCTATTG AGTGAGCAAT TGGCTCGAAT ATTTTCCAAA CTCCTGCTAG
  AATCATTAGA GCCGCAGAGA TCCTTATGGA CATCGCTAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss44959907	mCV27553525	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30748961					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135934621 () rs orientation: forward

Symbol	Name	Function Class
Cpgi801	CpG island 801	545 bp proximal
Igfn1	immunoglobulin-like and fibronectin type III domain containing 1	541 bp upstream
Rr28609	regulatory region 28609	379 bp proximal
Rr372097	regulatory region 372097	1614 bp upstream
Tmem9	transmembrane protein 9	1336 bp upstream