rs30749001 SNP Detail

Summary

• ID
  rs30749001
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7680073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACTTTCCACA TTCAATGTAA AACCTGTTGT CTTAGTGCAC TTCCAAAATA AATCCTACCC
  GGTGCCTGCA GGGCTGTTTA AAGACCTCTC TGTTGTCTCT CTTGTTGTCA TCCTGCTCAA
  AGCATCAGGA GATTTGACAG TACTTGTTAT CTTCACTGCA GCCCTGGTCT CCAGACAGCT
  CCCATCCACA GAGAAGGGCT ATCTAGAATA GGATTAGGCT CCAGCGTTGC AGTATGACAG
  GATGGAAGAG AGCTACTGTG GTGAGAAAGC ATTTCAACGA TGGAACATGG AAAAATGTCC
  M
  CCAAAAAAAA AAAAAAAAAA AAAAAAAAAA GGAAAGAGAG GAAAGAGAAA GAAAACAGGG
  AATTGCTGGC AAATGAAATC AGGAAACTGA GCCTCTCAGG CACACATTTC CAAAAATGTC
  ATTGGAACTC AGATGTGGAG AAAAGCAGTA GACAGAGATG AGGCTGCAGG GGTGGTTAAA
  GACTAACTCT ATAAACATGT CTAGGTTTGT GGCGGCTGTA TTAAACTCCC TGACCATAGG
  GTACACGTAG GTGTACAACT GCTCACATTC TATGCTTTTT TCCCCCCACC TGTTGTTGGG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45461705	mCV25136019	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30749001					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7680073 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12955	CpG island 12955	1571 bp distal
Gm16685	predicted gene, 16685	within coordinates
Il7	interleukin 7	1253 bp upstream
Rr77757	regulatory region 77757	1072 bp distal
Tssr28304	transcription start site region 28304	1124 bp downstream
Tssr28305	transcription start site region 28305	980 bp upstream
Tssr32541	transcription start site region 32541	1421 bp upstream
Tssr32542	transcription start site region 32542	1357 bp upstream
Tssr32543	transcription start site region 32543	1309 bp upstream
Tssr32544	transcription start site region 32544	1281 bp upstream
Tssr32545	transcription start site region 32545	1248 bp upstream
Tssr32546	transcription start site region 32546	1228 bp upstream