rs30749599 SNP Detail

Summary

• ID
  rs30749599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107353161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAGAAA GGAAGCTAAG
  ATGGTTGCTG GGGCTTTCTT CCTAAGGGGA GCTACTTGGG GTCTCAGACC CCAGGTCCTG
  GAAGCAAAGG CAGAGTGCCT GTGCTTGGTC TGAAGGATCT CTCAGTTTTG GCCTAGAGCC
  TCCTTTTGGG GGCTGGACCA CAGCTCAGAC ATCCTATAGC AGCAGTATTT CCCAATAGGG
  Y
  TTGTGAGGAT GTCCCAGGAG ATCAATCCTG GCAGGCGCAT ATTCTCATTT CCCCTCGGGT
  CTGGCTCAGG TAGGCTCTTG ATGAGTCTGC ATTCCTCAGA GAGTACCTGG CTAGTAGGGA
  TAATGGGTGG TGGCTCTAGT GCCAGACATA CTCAGAAGTG TCTCTGCCTT TCTCTCTAGA
  CCACTTAAGG CAATTACTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45459863	mCV24801951	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss46855665	NES10710863	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		T		C	C	T	C	T	T	C
ss135584077	ENSMUSSNP4898108	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30749599					SNP	T	T	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855665	NES10710863	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107353161 () rs orientation: forward

Symbol	Name	Function Class
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4	Intron
Rr582975	regulatory region 582975	1055 bp proximal